BIO On PubPhys: open In the literature: partially resolved Compiled by AI, not yet reviewed by an editor

What sets the folding speed limit and internal friction?

In plain words

The fastest proteins fold in about a microsecond, and theory and experiment suggest a floor of roughly N/100 microseconds for a chain of N amino acids. The question is which physical process sets this floor: the chain moving through water, or friction inside the chain itself.

Precise statement

For ultrafast folders (villin headpiece, WW domains; folding times $\sim 1 \text{ to } 10\ \mathrm{microseconds}$), determine the prefactor $k_0$ in the Kramers rate $k = k_0 \exp(-dG/k_B T)$, with the empirical estimate $\tau_{\min} \sim N/100\ \mathrm{microseconds}$ for $N$ residues (Kubelka, Hofrichter and Eaton, 2004), and separate solvent from internal friction through the viscosity dependence $\tau = a\eta + b$ at fixed stability ($\eta = \text{solvent viscosity}$). An answer gives $k_0$ and the internal-friction term $b$ with their molecular origin (backbone dihedral barriers, side-chain contacts) and reproduces measured $\eta$-dependences.

What would settle it

Viscosity-dependent single-molecule transition-path and folding-time measurements on ultrafast folders matched by all-atom or coarse-grained simulations that identify the friction source.

Status in the literature

Unverified note: it names recent work and was partly written without a live literature search; it awaits a check by an editor.

Single-molecule measurements since 2012 bound transition-path times at microseconds; the molecular origin of internal friction is still disputed as of 2026, to this survey's knowledge.

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